agat 0.6.1 100.00% Success

Executables

agat_sp_filter_feature_from_keep_list Succeeded agat_sp_filter_gene_by_intron_numbers Succeeded agat_sp_filter_record_by_coordinates Succeeded agat_sp_filter_gene_by_length Succeeded agat_sq_manage_attributes Succeeded agat_sp_filter_feature_from_kill_list Succeeded agat_sp_flag_premature_stop_codons Succeeded agat_sp_prokka_fix_fragmented_gene_annotations Succeeded agat_convert_embl2gff Succeeded agat_convert_bed2gff Succeeded agat_convert_genscan2gff Succeeded agat_convert_mfannot2gff Succeeded agat_convert_minimap2_bam2gff Succeeded agat_convert_sp_gff2bed Succeeded agat_convert_sp_gff2gtf Succeeded agat_convert_sp_gxf2gxf Succeeded agat_convert_sp_gff2tsv Succeeded agat_convert_sp_gff2zff Succeeded agat_sp_Prokka_inferNameFromAttributes Succeeded agat_sp_add_start_and_stop Succeeded agat_sp_add_introns Succeeded agat_sp_alignment_output_style Succeeded agat_sp_clipN_seqExtremities_and_fixCoordinates Succeeded agat_sp_compare_two_annotations Succeeded agat_sp_compare_two_BUSCOs Succeeded agat_sp_complement_annotations Succeeded agat_sp_ensembl_output_style Succeeded agat_sp_extract_attributes Succeeded agat_sp_filter_by_locus_distance Succeeded agat_sp_extract_sequences Succeeded agat_sp_filter_by_ORF_size Succeeded agat_sp_filter_by_mrnaBlastValue Succeeded agat_sp_filter_feature_by_attribute_presence Succeeded agat_sp_filter_feature_by_attribute_value Succeeded agat_sp_filter_incomplete_gene_coding_models Succeeded agat_sp_fix_cds_phases Succeeded agat_sp_fix_features_locations_duplicated Succeeded agat_sp_fix_fusion Succeeded agat_sp_fix_longest_ORF Succeeded agat_sp_fix_overlaping_genes Succeeded agat_sp_fix_small_exon_from_extremities Succeeded agat_sp_flag_short_introns Succeeded agat_sp_functional_statistics Succeeded agat_sp_keep_longest_isoform Succeeded agat_sp_kraken_assess_liftover Succeeded agat_sp_list_short_introns Succeeded agat_sp_load_function_from_protein_align Succeeded agat_sp_manage_UTRs Succeeded agat_sp_manage_IDs Succeeded agat_sp_manage_attributes Succeeded agat_sp_manage_functional_annotation Succeeded agat_sp_manage_introns Succeeded agat_sp_merge_annotations Succeeded agat_sp_sensitivity_specificity Succeeded agat_sp_separate_by_record_type Succeeded agat_sp_statistics Succeeded agat_sp_webApollo_compliant Succeeded agat_sq_add_attributes_from_tsv Succeeded agat_sq_add_hash_tag Succeeded agat_sq_add_locus_tag Succeeded agat_sq_keep_annotation_from_fastaSeq Succeeded agat_sq_list_attributes Succeeded agat_sq_mask Succeeded agat_sq_remove_redundant_entries Succeeded agat_sq_repeats_analyzer Succeeded agat_sq_manage_IDs Succeeded agat_sq_rfam_analyzer Succeeded agat_sq_split Succeeded agat_sq_stat_basic Succeeded