amos 3.1.0 67.26% Success

Executables

AMOScmp_shortReads_alignmentTrimmed Failed AMOScmp Failed AMOScmp_shortReads Failed assembleRNAs Failed benchmark_qual Failed blasr2coords Failed cavalidate Failed clusterSnps Failed contig2contig Succeeded fastq64_to_fastq33 Failed fastq_to_fasta_fast Failed find_ends Failed frg2fasta Failed frg2fastq Failed gccontent Failed gene_asm Failed kmers Failed minimus Failed rerunMultiTest Failed summarizeMultiTest Failed suspiciousfeat2region Failed tiling2cam Failed translate_fasta Failed Bundler Succeeded Chainer Failed FRCurve Succeeded FilterEdgesByCluster Succeeded Joiner Failed Linearize Succeeded Minimo Succeeded MarkRepeats Succeeded OrientContigs Succeeded OutputResults Succeeded OutputMotifs Succeeded OutputScaffolds Succeeded RankMotifs Succeeded ace2contig Succeeded agp2amos Failed amos2ace Succeeded amos2frg Succeeded amos2mates Succeeded amos2sq Failed amosvalidate Succeeded analyzeSNPs Succeeded analyze_read_depth Succeeded arachne2ctg Failed arachne2scaff Failed arrive Failed arrive2 Succeeded asmQC Succeeded asmQC2 Succeeded astats Succeeded bank2coverage Succeeded bank2contig Succeeded bank2sam Succeeded bank2lib Succeeded bank2scaff Succeeded bank2fasta Succeeded bank_clean Succeeded bank_combine Succeeded bank_mapping Succeeded bank_report Succeeded bank_transact Succeeded bank_tutorial Succeeded bank_unlock Failed benchmark2arachne Failed benchmark2ca Failed benchmark2ta Failed benchmark2mates Succeeded benchmark_seq Failed blat2nucmer Failed ca2ctg Failed ca2mates Succeeded ca2scaff Failed ca2singletons Succeeded ca2ta Succeeded casm_breaks Succeeded casm_layout Succeeded castats Succeeded cestat_cov Succeeded cgb2ctg Succeeded clk Succeeded contig2contig_contigfile Succeeded contig2contig_outcontigfile Succeeded contig2contig_seqfile Succeeded contig_cmp Succeeded coords2cam Failed ctg2fasta Failed ctg2umdcontig Succeeded ctgovl Failed cvgChop Succeeded cvgStat Succeeded delta2clr Succeeded delta2cvg Succeeded dumpContigsAsReads Succeeded dumpFeatures Succeeded dumpmates Succeeded dumpreads Succeeded excl_seqs Failed extractContig Succeeded extractScaffold Succeeded fasta_select_len Failed fasta_to_fastq Succeeded fastq_filter Failed fastq_rename Succeeded fastqqc Failed filter_contig Succeeded filter_seq Succeeded filterfrg Failed findChimeras Failed findMissingMates Succeeded findTcovSnp Succeeded find_duplicate_reads Succeeded find_query_breaks Succeeded find_tandem Succeeded fixfastq Failed fixfrg Failed fixlib Failed frg2ta Succeeded frg_umd_merge Succeeded gap_links Failed genome_complexity Succeeded genome_complexity_fast Succeeded getFRCvalues Failed getN50 Failed getlengths Failed goBambus2 Succeeded grow_readbank Succeeded hash_overlap Succeeded insert_sizes Succeeded iterate Failed kmer_count Succeeded kmer_cov Succeeded ktrimfrg Failed library_histogram Succeeded listGCContent Succeeded listReadPlacedStatus Succeeded listSingletonMates Succeeded listSurrogates Failed list_linked_contigs Succeeded listcontigreads Succeeded loadFeatures Succeeded load_overlaps Succeeded make_consensus Succeeded make_consensus_poly Succeeded merge_contigs Succeeded message_count Succeeded message_extract Succeeded message_validate Succeeded minimus2 Failed minimus2_blat Failed missing_reads Failed normalizeScaffold Succeeded nucmer2ovl Succeeded nucmerAnnotate Succeeded olapsFromContig Succeeded overlap_align Succeeded ovl2OVL Succeeded ovl_degr_dist Succeeded parsecasm Succeeded partitionBank Succeeded phd2afg Succeeded postCAqc Succeeded preTA Failed preassembleFrgs Succeeded printScaff Succeeded pullTArchive Failed pyrosim Succeeded qmer_filter Succeeded read_cov_plot Succeeded readinfo2cam Succeeded rearrangeSeqs Succeeded recallConsensus Succeeded renameReads Succeeded resetFragLibrary Succeeded revFasta Succeeded revScaffold Succeeded runAmos Succeeded runMultiTest Failed runTA Failed runTest Failed running_cmp Succeeded samPileupConsensus Failed samtoafg Succeeded scaff2fasta Failed scaffoldRange2Ungapped Succeeded select_reads Succeeded show_ma_asm Succeeded shuffleBank Succeeded sidebyside Succeeded sim_cover2 Succeeded sim_cover_depth Succeeded sim_shotgun Succeeded simpleContigLoader Succeeded simple_overlap Succeeded simplifyLibraries Succeeded singles Failed sort2 Succeeded ta2ace Succeeded tab2ovls Failed tagsum_reduce Failed tandemCollapse Succeeded tarchive2amos Succeeded tarchive2ca Succeeded tigger Succeeded toAmos_new Succeeded toAmos Succeeded toArachne Failed trace_comment Succeeded trace_comments Succeeded trace_convert Succeeded trace_scf_dump Succeeded trace_seq Succeeded trimByOvl Succeeded trimends Succeeded trimfrg Failed untangle Failed updateBankPositions Succeeded updateClrRanges Succeeded updateDeltaClr Succeeded updateLibSizes Succeeded vecfix Failed verify_layout Succeeded