anvio-minimal 7 93.10% Success

Executables

anvi_convert_trnaseq_database Succeeded anvi_compute_functional_enrichment Succeeded anvi_display_metabolism Succeeded anvi_estimate_trna_taxonomy Succeeded anvi_estimate_metabolism Succeeded anvi_run_kegg_kofams Succeeded anvi_import_items_order_misc_data_items_order Succeeded anvi_run_interacdome Succeeded anvi_script_augustus_output_to_external_gene_calls Succeeded anvi_run_trna_taxonomy Succeeded anvi_script_enrichment_stats Failed anvi_script_gen_pseudo_paired_reads_from_fastq Succeeded anvi_script_get_primer_matches Succeeded anvi_script_fix_homopolymer_indels Succeeded anvi_script_gen_help_pages Succeeded anvi_setup_interacdome Succeeded anvi_script_tabulate Succeeded anvi_script_pfam_accessions_to_hmms_directory Succeeded anvi_setup_kegg_kofams Succeeded anvi_setup_trna_taxonomy Succeeded anvi_setup_scg_taxonomy Succeeded anvi_trnaseq Succeeded 00_README Failed anvi_cluster_contigs Succeeded anvi_analyze_synteny Succeeded anvi_compute_ani Failed anvi_compute_completeness Succeeded anvi_compute_gene_cluster_homogeneity Succeeded anvi_db_info Succeeded anvi_delete_collection Succeeded anvi_compute_genome_similarity Succeeded anvi_delete_hmms Succeeded anvi_delete_misc_data Succeeded anvi_delete_state Succeeded anvi_dereplicate_genomes Succeeded anvi_display_contigs_stats Succeeded anvi_display_pan Succeeded anvi_display_structure Succeeded anvi_estimate_genome_completeness Succeeded anvi_estimate_genome_taxonomy Failed anvi_estimate_scg_taxonomy Succeeded anvi_experimental_organization Succeeded anvi_export_collection Succeeded anvi_export_contigs Succeeded anvi_export_functions Succeeded anvi_export_gene_calls Succeeded anvi_export_gene_coverage_and_detection Succeeded anvi_export_items_order Succeeded anvi_export_locus Succeeded anvi_export_misc_data Succeeded anvi_export_splits_and_coverages Succeeded anvi_export_splits_taxonomy Succeeded anvi_export_state Succeeded anvi_export_structures Succeeded anvi_export_table Succeeded anvi_gen_contigs_database Succeeded anvi_gen_gene_consensus_sequences Succeeded anvi_gen_fixation_index_matrix Succeeded anvi_gen_gene_level_stats_databases Succeeded anvi_gen_genomes_storage Succeeded anvi_gen_network Succeeded anvi_gen_phylogenomic_tree Succeeded anvi_gen_structure_database Succeeded anvi_gen_variability_matrix Succeeded anvi_get_aa_counts Succeeded anvi_gen_variability_network Succeeded anvi_gen_variability_profile Succeeded anvi_get_codon_frequencies Succeeded anvi_get_enriched_functions_per_pan_group Failed anvi_get_sequences_for_gene_calls Succeeded anvi_get_sequences_for_gene_clusters Succeeded anvi_get_split_coverages Succeeded anvi_get_sequences_for_hmm_hits Succeeded anvi_get_short_reads_from_bam Succeeded anvi_get_short_reads_mapping_to_a_gene Succeeded anvi_help Succeeded anvi_import_collection Succeeded anvi_import_functions Succeeded anvi_import_misc_data Succeeded anvi_import_state Succeeded anvi_import_taxonomy_for_genes Succeeded anvi_import_taxonomy_for_layers Succeeded anvi_init_bam Succeeded anvi_inspect Succeeded anvi_matrix_to_newick Succeeded anvi_mcg_classifier Succeeded anvi_merge Succeeded anvi_interactive Succeeded anvi_merge_bins Succeeded anvi_meta_pan_genome Succeeded anvi_migrate Failed anvi_pan_genome Succeeded anvi_oligotype_linkmers Succeeded anvi_profile Succeeded anvi_push Succeeded anvi_refine Succeeded anvi_report_linkmers Succeeded anvi_rename_bins Succeeded anvi_run_ncbi_cogs Succeeded anvi_run_hmms Succeeded anvi_run_pfams Succeeded anvi_run_scg_taxonomy Succeeded anvi_run_workflow Succeeded anvi_scan_trnas Succeeded anvi_script_add_default_collection Succeeded anvi_script_calculate_pn_ps_ratio Succeeded anvi_script_checkm_tree_to_interactive Succeeded anvi_script_estimate_genome_size Succeeded anvi_script_compute_ani_for_fasta Succeeded anvi_script_filter_fasta_by_blast Succeeded anvi_script_gen_CPR_classifier Succeeded anvi_script_gen_distribution_of_genes_in_a_bin Succeeded anvi_script_gen_programs_vignette Succeeded anvi_script_gen_hmm_hits_matrix_across_genomes Succeeded anvi_script_gen_scg_domain_classifier Succeeded anvi_script_gen_programs_network Succeeded anvi_script_gen_short_reads Succeeded anvi_script_gen_stats_for_single_copy_genes Failed anvi_script_gen_stats_for_single_copy_genes Succeeded anvi_script_gen_stats_for_single_copy_genes Failed anvi_script_get_collection_info Failed anvi_script_get_coverage_from_bam Succeeded anvi_script_get_hmm_hits_per_gene_call Succeeded anvi_script_predict_CPR_genomes Succeeded anvi_script_process_genbank Succeeded anvi_script_process_genbank_metadata Succeeded anvi_script_reformat_fasta Succeeded anvi_script_run_eggnog_mapper Succeeded anvi_script_transpose_matrix Succeeded anvi_script_snvs_to_interactive Succeeded anvi_script_variability_to_vcf Succeeded anvi_script_visualize_split_coverages Failed anvi_search_functions Succeeded anvi_self_test Succeeded anvi_setup_ncbi_cogs Succeeded anvi_setup_pdb_database Succeeded anvi_setup_pfams Succeeded anvi_show_collections_and_bins Succeeded anvi_show_misc_data Succeeded anvi_split Succeeded anvi_update_db_description Succeeded anvi_summarize Succeeded anvi_upgrade Succeeded anvi_update_structure_database Succeeded anvi_script_merge_collections Succeeded