augustus 3.4.0 53.72% Success

Executables

PF00225_full Failed PF00225_seed Failed add_name_to_gff3 Succeeded aln2wig Succeeded augustify Succeeded executeTestCGP Succeeded extractAnno Succeeded get_loci_from_gb Succeeded pp_simScore Succeeded augustus2gbrowse Failed augustus2browser Failed extractTranscriptEnds Failed README Failed SplicedAlignment Failed aa2nonred Succeeded augustus Succeeded autoAug Succeeded autoAugPred Succeeded autoAugTrain Succeeded bam2hints Succeeded bam2wig Succeeded bamToWig Succeeded bedgraph2wig Succeeded blat2gbrowse Succeeded blat2hints Succeeded block2prfl Failed cegma2gff Failed checkParamArchive Failed checkUTR Failed cleanDOSfasta Failed clusterAndSplitGenes Succeeded compare_masking Succeeded compileSpliceCands Succeeded computeFlankingRegion Failed createAugustusJoblist Succeeded del_from_prfl Failed etraining Succeeded evalCGP Succeeded eval_dualdecomp Succeeded eval_multi_gtf Succeeded exonerate2hints Succeeded exoniphyDb2hints Failed fastBlockSearch Succeeded filterBam Succeeded filterGenes Succeeded filterGenesIn Succeeded filterGenesIn_mRNAname Succeeded filterGenesOut_mRNAname Succeeded filterInFrameStopCodons Failed filterMaf Succeeded filterPSL Succeeded filterShrimp Succeeded filterSpliceHints Failed filter_ppx Failed findGffNamesInFasta Failed fix_in_frame_stop_codon_genes Succeeded fix_joingenes_gtf Failed gbSmallDNA2gff Failed gbrowse Failed gbrowseold2gff3 Succeeded getAnnoFasta Succeeded getAnnoFastaFromJoingenes Succeeded getLinesMatching Succeeded getSeq Succeeded gff2gbSmallDNA Succeeded gff2ps_mycustom Failed gffGetmRNA Succeeded gp2othergp Failed gtf2aa Failed gtf2gff Succeeded gth2gtf Failed hal2maf_split Succeeded homGeneMapping Succeeded joinPeptides Failed join_aug_pred Failed join_mult_hints Failed joingenes Succeeded load2sqlitedb Succeeded maf2conswig Failed makeMatchLists Failed makeUtrTrainingSet Succeeded maskNregions Failed merge_masking Succeeded moveParameters Failed msa2prfl Succeeded new_species Succeeded opt_init_and_term_probs Failed optimize_augustus Succeeded parseSim4Output Failed partition_gtf2gb Succeeded pasapolyA2hints Failed peptides2alternatives Failed peptides2hints Failed phastconsDB2hints Failed polyA2hints Succeeded prepareAlign Failed prints2prfl Failed pslMap Succeeded randomSplit Succeeded retroDB2hints Failed rmRedundantHints Failed runAllSim4 Failed samMap Failed scipiogff2gff Failed setStopCodonFreqs Failed simpleFastaHeaders Failed simplifyFastaHeaders Failed splitMfasta Succeeded split_wiggle Failed summarizeACGTcontent Failed transMap2hints Succeeded uniquePeptides Failed utrgff2gbrowse Failed utrrnaseq Succeeded webserver_results Failed webserver_results Failed weedMaf Succeeded wig2hints Succeeded wigchoose Succeeded writeResultsPage Failed yaml2gff Succeeded