cactus 2019.03.01 66.37% Success

Executables

cactus2hal Succeeded cactus_batch_mergeChunks Failed docker_test_script Failed halHdf5Tests Failed sonLib_cigarTest Failed sonLib_daemonize Failed sonLib_fastaCTest Failed 3EdgeTests Failed blossom5 Succeeded blossom_randGraph Succeeded cPecanAlign Failed cPecanModifyHmm Failed cPecanLibTests Failed cPecanEm Failed cPecanRealign Succeeded cactus2hal Succeeded cactus Succeeded cactus2hal Succeeded cactus2hal Succeeded cactus2hal Succeeded cactus2hal_stitch Failed cactusAPITests Failed cactus_addReferenceCoordinates Succeeded cactus_analyseAssembly Failed cactus_bar Succeeded cactus_barTests Failed cactus_blast_chunkFlowerSequences Failed cactus_blast_convertCoordinates Failed cactus_blast_chunkSequences Failed cactus_blast_sortAlignments Failed cactus_caf Succeeded cactus_calculateMappingQualities Failed cactus_convertAlignmentsToInternalNames Succeeded cactus_check Succeeded cactus_covered_intervals Succeeded cactus_coverage Succeeded cactus_fasta_fragments Succeeded cactus_fasta_softmask_intervals Succeeded cactus_fastaGenerator Succeeded cactus_fillAdjacencies Succeeded cactus_filterSmallFastaSequences Succeeded cactus_halGeneratorTests Failed cactus_halGenerator Succeeded cactus_getReferenceSeq Succeeded cactus_makeAlphaNumericHeaders Succeeded cactus_mirrorAndOrientAlignments Failed cactus_normalisation Succeeded cactus_phylogeny Succeeded cactus_setup Succeeded cactus_reference Succeeded cactus_secondaryDatabase Failed cactus_preprocess Succeeded cactus_splitAlignmentOverlaps Failed cactus_workflow_extendFlowers Failed cactus_stripUniqueIDs Succeeded cactus_workflow_getFlowers Failed cactus_workflow_flowerStats Failed cactus_workflow_convertAlignmentCoordinates Failed dbTestScript Succeeded findRegionsExclusivelyInGroup Succeeded hal2assemblyHub Succeeded hal2chain Succeeded hal2fasta Succeeded hal2maf Succeeded hal2mafMP Succeeded hal4dExtract Succeeded hal4dExtractTest Failed halAddToBranch Succeeded halAlignedExtract Succeeded halAlignmentDepth Succeeded halApiTests Failed halAppendCactusSubtree Succeeded halAppendSubtree Succeeded halBranchMutations Succeeded halChainTests Failed halCoverage Succeeded halExtract Succeeded halIndels Succeeded halLiftover Succeeded halLiftoverTests Failed halLodExtract Succeeded halLodInterpolate Succeeded halMafTests Failed halMaskExtract Succeeded halRandGen Succeeded halRemoveGenome Succeeded halRenameGenomes Succeeded halRenameSequences Succeeded halReplaceGenome Succeeded halSetMetadata Succeeded halSingleCopyRegionsExtract Succeeded halSnps Succeeded halStats Succeeded halSummarizeMutations Succeeded halSynteny Succeeded halTestGen Succeeded halTreeMutations Succeeded halTreeNIBackground Succeeded halTreeNIConservation Succeeded halTreeNITurnover Succeeded halUpdateBranchLengths Succeeded halValidate Succeeded halWiggleLiftover Succeeded halWriteNucleotides Succeeded maf2hal Succeeded matchGraph Succeeded matchingAndOrderingTests Failed mwmatching Succeeded referenceTests Failed sonLibTests Failed sonLib_kvDatabaseTest Succeeded stCafTests Failed stPinchesAndCactiTests Failed