cdna_cupcake 22.0.0 62.86% Success

Executables

mag_phaser Failed color_bed12_post_sqanti Succeeded fusion_collate_info Succeeded make_csv_for_dedup Failed simple_stats_post_collapse Succeeded BED Failed BioReaders Failed STAR Failed coordinate_mapper Failed SeqReaders Failed MPileUpVariantCaller Failed MummerSNPReader Failed SAMMPileUpReader Failed STARwrapper Succeeded SeqSplitter Failed UMI_BC_error_correct Succeeded VariantPhaseCleaner Failed VariantPhaser Failed alignment_stats_from_sam Succeeded calc_expected_accuracy_from_fastq Succeeded calc_probe_hit_from_sam Succeeded chain_fusion_samples Succeeded chain_samples Succeeded clip_out_UMI_cellBC Succeeded cluster_by_UMI_mapping Failed collapse_isoforms_by_sam Succeeded collate_FLNC_gene_info Succeeded create_fake_genome Succeeded demux_isoseq2_no_genome Succeeded dedup_FLNC_per_cluster Succeeded demux_by_barcode_groups Succeeded demux_by_barcode_for_subsampling Succeeded demux_isoseq_no_genome Succeeded demux_isoseq_with_genome Succeeded err_correct_w_genome Succeeded fa2fq Succeeded filter_away_subset Succeeded filter_by_count Succeeded filter_lq_isoforms Succeeded fq2fa Succeeded fusion_finder Succeeded get_abundance_post_collapse Succeeded get_gffs_from_list Succeeded get_seq_stats Succeeded get_seqs_from_list Succeeded group_ORF_sequences Succeeded ice_pbdagcon2 Failed make_file_for_subsampling_from_collapsed Succeeded match_w_annotation Succeeded parse_matchAnnot Succeeded picking_up_ice2 Failed randomly_select_sequences Succeeded revcomp Failed run_IceArrow2 Failed run_IceInit2 Failed run_IceIterative2 Failed run_IcePartial2 Failed run_phaser Failed run_preCluster Failed sam_to_bam Failed sam_to_collapsed_gff Succeeded sam_to_gff3 Succeeded scrub_sample_GFF_junctions Succeeded simulate Succeeded simulate_phasing_data_from_fasta Failed snps_to_vcf Failed subsample Succeeded subsample_with_category Succeeded summarize_gmap_sam Succeeded summarize_sample_GFF_junctions Succeeded