homer 4.11 69.15% Success

Executables

HomerSVGLogo Failed blat2gtf Failed combineHubs Succeeded conservationPerLocus Failed convertOrganismID Succeeded convertOrganismID Succeeded findHiCInteractionsByChr Succeeded findcsRNATSS Succeeded randomizeMotifs Succeeded tagDir2HiCsummary Succeeded tagDir2bed Succeeded tagDir2hicFile Succeeded GenomeOntology Succeeded HomerConfig Failed SIMA Succeeded Statistics Failed addData Failed addDataHeader Failed addInternalData Failed addOligos Failed addGeneAnnotation Succeeded adjustRedunGroupFile Failed adjustPeakFile Succeeded analyzeChIP_Seq Succeeded analyzeHiC Succeeded analyzeRNA Succeeded analyzeRepeats Succeeded annotateInteractions Succeeded annotateRelativePosition Failed annotateTranscripts Succeeded annotatePeaks Succeeded assignGeneWeights Failed assignGenomeAnnotation Succeeded assignTSStoGene Succeeded batchAnnotatePeaksHistogram Failed batchFindMotifs Succeeded batchMakeMultiWigHub Failed batchFindMotifsGenome Succeeded batchMakeHiCMatrix Succeeded batchParallel Succeeded batchMakeTagDirectory Failed bed2tag Failed bed2pos Succeeded bed2DtoUCSCbed Succeeded bridgeResult2Cytoscape Failed changeNewLine Succeeded checkPeakFile Succeeded checkTagBias Succeeded chopUpBackground Succeeded chopUpPeakFile Succeeded chopify Succeeded cleanUpPeakFile Failed cleanUpSequences Succeeded cluster2bedgraph Succeeded cluster2bed Succeeded combineGO Succeeded combineHubs Succeeded combineHubs Succeeded combineHubs Succeeded combineHubs Succeeded compareMotifs Succeeded condenseBedGraph Succeeded cons2fasta Failed conservationAverage Failed convertCoordinates Succeeded convertIDs Succeeded convertOrganismID Succeeded convertOrganismID Succeeded convertOrganismID Succeeded convertOrganismID Succeeded convertOrganismID Succeeded convertOrganismID Succeeded createIGVhtml Failed duplicateCol Failed eland2tags Succeeded fasta2tab Failed filterListBy Failed filterTADsAndCPs Succeeded filterTADsAndLoops Succeeded filterTagDirectory Succeeded findGO Succeeded findGOtxt Failed findHiCCompartments Succeeded findHiCDomains Succeeded findHiCInteractionsByChr Succeeded findHiCInteractionsByChr Succeeded findHiCInteractionsByChr Succeeded findHiCInteractionsByChr Succeeded findKnownMotifs Succeeded findMotifs Succeeded findMotifsGenome Succeeded findPeaks Succeeded findRedundantBLAT Failed findTADsAndLoops Succeeded findTADsAndLoopsFromRelMatrix Succeeded findTopMotifs Succeeded findcsRNATSS Succeeded findcsRNATSS Succeeded findcsRNATSS Succeeded findcsRNATSS Succeeded findcsRNATSS Succeeded findcsRNATSS Succeeded findcsRNATSS Succeeded flipPC1toMatch Failed freq2group Succeeded genericConvertIDs Failed genomeOntology Succeeded getChrLengths Succeeded getConservedRegions Succeeded getDiffExpression Succeeded getDifferentialBedGraph Failed getDifferentialPeaks Succeeded getDifferentialPeaksReplicates Succeeded getDistalPeaks Succeeded getFocalPeaks Succeeded getGWASoverlap Succeeded getGenesInCategory Failed getGenomeTilingPeaks Succeeded getHiCcorrDiff Succeeded getHomerQCstats Succeeded getLikelyAdapters Succeeded getMappableRegions Failed getMappingStats Succeeded getPartOfPromoter Failed getPeakTags Succeeded getPos Failed getRandomReads Succeeded getSiteConservation Failed getTopPeaks Failed gff2pos Failed go2cytoscape Succeeded groupSequences Failed homer Succeeded homer2 Failed homerTools Succeeded joinFiles Failed loadGenome Succeeded loadPromoters Succeeded makeBigBedMotifTrack Succeeded makeBigWig Failed makeBinaryFile Failed makeHiCWashUfile Failed makeMetaGeneProfile Succeeded makeMultiWigHub Failed makeTagDirectory Succeeded makeUCSCfile Succeeded map_fastq Succeeded merge2Dbed Succeeded mergeData Succeeded mergePeaks Succeeded motif2Jaspar Succeeded motif2Logo Succeeded parseGTF Succeeded pos2bed Succeeded prepForR Failed preparseGenome Succeeded profile2seq Failed randRemoveBackground Failed randomizeGroupFile Failed randomizeMotifs Failed randomizeMotifs Failed removeAccVersion Failed removeBadSeq Failed removeOutOfBoundsReads Succeeded removePoorSeq Succeeded removeRedundantPeaks Succeeded renamePeaks Succeeded resizePosFile Failed revoppMotif Succeeded rotateHiCmatrix Failed runHiCpca Succeeded sam2spliceJunc Failed scanMotifGenomeWide Succeeded scrambleFasta Succeeded selectRepeatBg Failed seq2profile Succeeded subtractBedGraphs Succeeded subtractBedGraphsDirectory Succeeded tab2fasta Failed tag2bed Failed tag2pos Succeeded tagDir2HiCsummary Succeeded tagDir2HiCsummary Succeeded tagDir2bed Succeeded tagDir2bed Succeeded tagDir2hicFile Succeeded tagDir2hicFile Succeeded zipHomerResults Failed