ngs-bits 2021_03 93.52% Success

Executables

FastqDownsample Succeeded VariantRanking Succeeded VcfCalculatePRS Succeeded BamCleanHaloplex Succeeded BamClipOverlap Succeeded BamDownsample Succeeded BamFilter Succeeded BamToFastq Succeeded BedAdd Succeeded BedAnnotateFreq Succeeded BedAnnotateFromBed Succeeded BedAnnotateGC Succeeded BedAnnotateGenes Succeeded BedChunk Succeeded BedCoverage Succeeded BedGeneOverlap Succeeded BedHighCoverage Succeeded BedInfo Succeeded BedIntersect Succeeded BedLowCoverage Succeeded BedMerge Succeeded BedReadCount Succeeded BedShrink Succeeded BedSort Succeeded BedSubtract Succeeded BedToFasta Succeeded BedpeAnnotateCnvOverlap Succeeded BedpeAnnotateFromBed Succeeded BedpeFilter Succeeded BedpeGeneAnnotation Succeeded BedpeToBed Succeeded CnvFilterAnnotations Succeeded CnvGeneAnnotation Succeeded CnvHunter Succeeded FastaInfo Succeeded FastqAddBarcode Succeeded FastqConcat Succeeded FastqConvert Succeeded FastqExtract Succeeded FastqExtractBarcode Succeeded FastqExtractUMI Succeeded FastqFormat Succeeded FastqList Succeeded FastqMidParser Succeeded FastqToFasta Succeeded FastqTrim Succeeded GSvar Failed GSvar_filters Failed GSvar_filters_cnv Failed GSvar_filters_sv Failed GSvar_special_regions Failed GenesToApproved Succeeded GenesToBed Succeeded MappingQC Succeeded NGSDAddVariantsGermline Succeeded NGSDAddVariantsSomatic Succeeded NGSDAnnotateCNV Succeeded NGSDAnnotateSV Succeeded NGSDExportAnnotationData Succeeded NGSDExportCnvTrack Succeeded NGSDExportGenes Succeeded NGSDExportSamples Succeeded NGSDImportEnsembl Succeeded NGSDImportGeneInfo Succeeded NGSDImportHGNC Succeeded NGSDImportHPO Succeeded NGSDImportOMIM Succeeded NGSDImportORPHA Succeeded NGSDImportQC Succeeded NGSDInit Succeeded NGSDMaintain Succeeded PERsim Succeeded PhenotypeSubtree Succeeded PhenotypesToGenes Succeeded ReadQC Succeeded RohHunter Succeeded SampleAncestry Succeeded SampleDiff Succeeded SampleGender Succeeded SampleOverview Succeeded SampleSimilarity Succeeded SeqPurge Succeeded SomaticQC Succeeded SvFilterAnnotations Succeeded TrioMaternalContamination Succeeded TsvFilter Succeeded TsvInfo Succeeded TsvMerge Succeeded TsvSlice Succeeded BedExtend Succeeded UpdHunter Succeeded VariantAnnotateFrequency Succeeded VariantFilterAnnotations Succeeded VariantFilterRegions Succeeded VariantQC Succeeded VcfAnnotateFromBed Succeeded VcfAnnotateFromVcf Succeeded VcfBreakMulti Succeeded VcfCheck Succeeded VcfExtractSamples Succeeded VcfFilter Succeeded VcfLeftNormalize Succeeded VcfSort Succeeded VcfStreamSort Succeeded VcfToBedpe Succeeded VcfToTsv Succeeded settings Failed settings_nightly Failed