aCLImatise Base Camp

Packages GitHub

plasmidid
1.6.5

plasmidid 1.6.5 93.10% Success

Executables

adapt_filter_coverage Succeeded blast_align Succeeded blast_to_bed Succeeded blast_to_complete Succeeded blast_to_link Succeeded bowtie_mapper Succeeded build_karyotype Succeeded calculate_seqlen Succeeded cdhit_cluster Succeeded check_dependencies Failed check_mandatory_files Succeeded coordinate_adapter Succeeded download_plasmid_database Succeeded draw_circos_images Succeeded filter_fasta Succeeded get_coverage Succeeded gff_to_bed Succeeded mash_screener Succeeded mashclust Succeeded ncbi_database_fetcher Succeeded plasmidID Succeeded process_cluster_output Succeeded prokka_annotation Succeeded quality_trim Succeeded rename_from_fasta Succeeded sam_to_bam Succeeded spades_assembly Succeeded summary_report_pid Succeeded summary_table Failed