wgs-assembler 8.3 78.63% Success

Executables

greedyFragmentTiling Failed utg2fasta Failed PBcR Succeeded addCNSToStore Succeeded addReadsToUnitigs Succeeded analyzeBest Succeeded analyzePosMap Succeeded analyzeScaffolds Succeeded asmOutputFasta Succeeded asmOutputStatistics Succeeded asmToAGP Failed bogusness Failed buildPosMap Succeeded buildRefContigs Succeeded buildUnitigs Succeeded ca2ace Failed caqc Failed caqc_help Failed cat_corrects Succeeded cat_erates Succeeded cgw Succeeded cgwDump Succeeded chimChe Succeeded chimera Succeeded classifyMates Succeeded classifyMatesApply Succeeded classifyMatesPairwise Succeeded computeCoverageStat Succeeded convertOverlap Succeeded convertSamToCA Succeeded convertToPBCNS Succeeded convert_fasta_to_v2 Failed correctPacBio Succeeded correct_frags Succeeded correct_olaps Succeeded ctgcns Succeeded deduplicate Succeeded demotePosMap Failed dumpCloneMiddles Succeeded dumpPBRLayoutStore Failed dumpSingletons Succeeded erate_estimate Failed estimate_mer_threshold Succeeded extendClearRanges Succeeded extendClearRangesPartition Succeeded extractmessages Succeeded falcon_sense Succeeded fastaToCA Failed fastqAnalyze Succeeded fastqSample Succeeded fastqSimulate Succeeded fastqSimulate_sort Succeeded fastqToCA Succeeded filterOverlap Succeeded finalTrim Succeeded fixUnitigs Succeeded fragmentDepth Succeeded fragsInVars Succeeded frgs2clones Succeeded gatekeeper Succeeded gatekeeperbench Succeeded gkpStoreCreate Succeeded gkpStoreDumpFASTQ Succeeded greedy_layout_to_IUM Failed initialTrim Succeeded markRepeatUnique Succeeded markUniqueUnique Succeeded merTrimApply Succeeded merTrim Succeeded mercy Succeeded mergeqc Failed metagenomics_ovl_analyses Succeeded olap_from_seeds Succeeded outputLayout Succeeded overlapStats Succeeded overlapStore Succeeded overlapStoreBucketizer Succeeded overlapStoreBuild Succeeded overlapStoreIndexer Succeeded overlapStoreSorter Failed overlap_partition Succeeded overmerry Succeeded pacBioToCA Succeeded pbutgcns Succeeded removeMateOverlap Succeeded remove_fragment Succeeded replaceUIDwithName_fastq Failed replaceUIDwithName_posmap Failed resolveSurrogates Succeeded rewriteCache Failed runCA Succeeded runCA Succeeded runCA_dedupe Failed runCA_overlapStoreBuild Succeeded run_greedy Failed sffToCA Succeeded show_corrects Succeeded splitUnitigs Succeeded terminator Succeeded tigStore Succeeded tracearchiveToCA Failed tracedb_to_frg Failed trimFastqByQVWindow Succeeded uidclient Succeeded upgrade_v8_to_v9 Failed upgrade_v9_to_v10 Failed utgcnsfix Succeeded pbdagcon Succeeded unitigger Succeeded bogart Succeeded bogus Failed jellyfish Succeeded overlapInCore Succeeded utgcns Succeeded blasr Succeeded jellyfish_arg Succeeded jellyfish_cmd Succeeded